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tutorial:torque [2016/11/28 10:15]
sertalpbilal [Queues] 		tutorial:torque [2017/02/09 15:23]
sertalpbilal
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 Now, we will run the code but we are setting the job parameters using ''-'' character (e.g. ''-N JobName'') Now, we will run the code but we are setting the job parameters using ''-'' character (e.g. ''-N JobName'')
  
-===== Important Options ===== +===== Options =====
  
   * ''-q <queue>'' set the queue. Often you will use the standard queue, so no need to set this up.   * ''-q <queue>'' set the queue. Often you will use the standard queue, so no need to set this up.
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 To show the jobs use ''qstat'' or ''qstat -a'' You can also see more details using To show the jobs use ''qstat'' or ''qstat -a'' You can also see more details using
 <code>qstat -f</code> <code>qstat -f</code>
-To show jobs of some user use ''qstat -u "mat614"'' To remove job do ''qdel JOB_ID''+To show jobs of some user use ''qstat -u "mat614"'' To remove job use 
 +<code shell> 
 +qdel JOB_ID 
 +</code>
  
 ==== Queues ==== ==== Queues ====
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 | very long  | 240:00:00 | | very long  | 240:00:00 |
  
-==== Examples ====+===== Examples ===== 
 + 
 +==== Submitting a Small or Large Memory Job ==== 
 + 
 +You can use the option ''-l mem=size,vmem=size'' to limit memory usage of your job. 
 + 
 +<code bash limited.sh> 
 +qsub -l mem=4gb,vmem=4gb test.pbs 
 +</code>
  
-=== Submitting Large Memory Job ===+Sometimes your job needs more memory. You can choose a larger memory size with the same option:
  
-Sometimes your job needs more memory. This can be achieved by ''-l mem=size'' example +<code bash large.pbs>qsub  -l mem=20gb  test.pbs</code>
-<code>qsub  -l mem=20gb  test.pbs</code>+
  
-=== Running MATLAB -- Example ===+==== Running MATLAB ====
  
 You just have to create a submission job which looks like this You just have to create a submission job which looks like this
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 </code> </code>
  
-=== Interactive Jobs ===+<note tip>Use **-singleCompThread** [[https://www.mathworks.com/help/matlab/ref/maxnumcompthreads.html|option]] for Matlab to use a single thread. A similar option may be needed for the program/solver you're using.</note>
  
 +==== Interactive Jobs ====
  
 If you do not care where you run your job just use ''-I'' and do not specify any script to run. If you do not care where you run your job just use ''-I'' and do not specify any script to run.
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 and you will be running interactive session on polyp15. and you will be running interactive session on polyp15.
  
-=== Using GPU's ===+==== Using GPU's ====
  
  
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 However, first you have to have a permission to use GPU (given by Prof. Takac) -- this is just formality to allow to certain users to use video driver on polyp30 However, first you have to have a permission to use GPU (given by Prof. Takac) -- this is just formality to allow to certain users to use video driver on polyp30
  
-=== Running MPI and Parallel Jobs ===+==== Running MPI and Parallel Jobs ====
  
 <code bash mpi.pbs> <code bash mpi.pbs>
tutorial/torque.txt · Last modified: 2024/02/28 13:12 by mjm519

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