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tutorial:torque [2016/11/08 16:15] takac |
tutorial:torque [2016/12/13 10:00] sertalpbilal [Examples] |
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===== Submitting Jobs ===== | ===== Submitting Jobs ===== | ||
- | |||
- | <note tip> | ||
Jobs can be submitted either using a submission file or directly from command line. First we explain how it is done and then we will discuss the options. | Jobs can be submitted either using a submission file or directly from command line. First we explain how it is done and then we will discuss the options. | ||
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To show the jobs use '' | To show the jobs use '' | ||
< | < | ||
- | To show jobs of some user use '' | + | To show jobs of some user use '' |
+ | <code shell> | ||
+ | qdel JOB_ID | ||
+ | </ | ||
==== Queues ==== | ==== Queues ==== | ||
- | We have few queues '' | + | We have few queues '' |
< | < | ||
Queue Memory CPU Time Walltime Node Run Que Lm State | Queue Memory CPU Time Walltime Node Run Que Lm State | ||
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medium | medium | ||
short -- -- | short -- -- | ||
- | long | + | long |
batch -- -- | batch -- -- | ||
verylong | verylong | ||
- | AMPL | + | AMPL |
MOSEK -- -- | MOSEK -- -- | ||
</ | </ | ||
+ | |||
+ | If you want to use AMPL or MOSEK, you have to use queue: AMPL or MOSEK, because we have limited licenses for them. | ||
+ | |||
+ | |||
You can see limits using this command '' | You can see limits using this command '' | ||
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/ | / | ||
</ | </ | ||
+ | |||
+ | <note tip>Use **-singleCompThread** [[https:// | ||
=== Interactive Jobs === | === Interactive Jobs === | ||
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c2 | c2 | ||
</ | </ | ||
- | |||
- | ===== Advanced ===== | ||
- | |||
- | |||
- | The qsub command will pass certain environment variables in the Variable_List attribute of the job. These variables will be available to the job. The value for the following variables will be taken from the environment of the qsub command: | ||
- | * **HOME** (the path to your home directory) | ||
- | * **LANG** (which language you are using) | ||
- | * **LOGNAME** (the name that you logged in with) | ||
- | * **PATH** (standard path to excecutables) | ||
- | * **MAIL** (location of the users mail file) | ||
- | * **SHELL** (command shell, i.e bash, | ||
- | * **TZ** (time zone) | ||
- | These values will be assigned to a new name which is the current name prefixed with the string " | ||
- | * **PBS_O_HOST** (the name of the host upon which the qsub command is running) | ||
- | * **PBS_SERVER** (the hostname of the pbs_server which qsub submits the job to) | ||
- | * **PBS_O_QUEUE** (the name of the original queue to which the job was submitted) | ||
- | * **PBS_O_WORKDIR** (the absolute path of the current working directory of the qsub command) | ||
- | * **PBS_ARRAYID** (each member of a job array is assigned a unique identifier) | ||
- | * **PBS_ENVIRONMENT** (set to PBS_BATCH to indicate the job is a batch job, or to PBS_INTERACTIVE to indicate the job is a PBS interactive job) | ||
- | * **PBS_JOBID** (the job identifier assigned to the job by the batch system) | ||
- | * **PBS_JOBNAME** (the job name supplied by the user) | ||
- | * **PBS_NODEFILE** (the name of the file contain the list of nodes assigned to the job) | ||
- | * **PBS_QUEUE** (the name of the queue from which the job was executed from) | ||
- | * **PBS_WALLTIME** (the walltime requested by the user or default walltime allotted by the scheduler) | ||
===== Mass Operations ===== | ===== Mass Operations ===== | ||
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</ | </ | ||
will cancel all jobs (both running jobs and queue). | will cancel all jobs (both running jobs and queue). | ||
+ | |||
+ | |||
+ | ===== Advanced ===== | ||
+ | |||
+ | |||
+ | The qsub command will pass certain environment variables in the Variable_List attribute of the job. These variables will be available to the job. The value for the following variables will be taken from the environment of the qsub command: | ||
+ | * **HOME** (the path to your home directory) | ||
+ | * **LANG** (which language you are using) | ||
+ | * **LOGNAME** (the name that you logged in with) | ||
+ | * **PATH** (standard path to excecutables) | ||
+ | * **MAIL** (location of the users mail file) | ||
+ | * **SHELL** (command shell, i.e bash, | ||
+ | * **TZ** (time zone) | ||
+ | These values will be assigned to a new name which is the current name prefixed with the string " | ||
+ | * **PBS_O_HOST** (the name of the host upon which the qsub command is running) | ||
+ | * **PBS_SERVER** (the hostname of the pbs_server which qsub submits the job to) | ||
+ | * **PBS_O_QUEUE** (the name of the original queue to which the job was submitted) | ||
+ | * **PBS_O_WORKDIR** (the absolute path of the current working directory of the qsub command) | ||
+ | * **PBS_ARRAYID** (each member of a job array is assigned a unique identifier) | ||
+ | * **PBS_ENVIRONMENT** (set to PBS_BATCH to indicate the job is a batch job, or to PBS_INTERACTIVE to indicate the job is a PBS interactive job) | ||
+ | * **PBS_JOBID** (the job identifier assigned to the job by the batch system) | ||
+ | * **PBS_JOBNAME** (the job name supplied by the user) | ||
+ | * **PBS_NODEFILE** (the name of the file contain the list of nodes assigned to the job) | ||
+ | * **PBS_QUEUE** (the name of the queue from which the job was executed from) | ||
+ | * **PBS_WALLTIME** (the walltime requested by the user or default walltime allotted by the scheduler) | ||
+ | |||
+ | |||